Creating and Saving a NG-CHMCreating an NG-CHM and saving to file |
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Create a new NGCHM. |
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Export a standalone HTML containing the NGCHM to a file. |
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Export a standalone NGCHM to a file. |
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Covariate BarsCreating and adding covariate bars |
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Add a covariate to an auxiliary dataset. |
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Add a covariate bar to a NGCHM. |
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Get a covariate attached to an NG-CHM dataset. |
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Get a covariate bar attached to an NG-CHM. |
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Create a new Covariate for adding to an NGCHM auxilary dataset. |
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Create a new covariate Bar for a NGCHM |
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Color Maps and Data LayersCreating color maps and data layers |
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Add a Layer to a NGCHM. |
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Get the color map of an NG-CHM object. |
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Get a specified Data Layer from an NG-CHM. |
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Create a new Color Map for use in constructing a NGCHM |
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Create a new Data Layer for a NGCHM. |
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Specifying Axis TypeFor automatically adding linkouts |
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Add an axis type to a NGCHM. |
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Alphabetical ListAlphabetical List of Functions |
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Javascript extensions for the Next Generation Clustered Heat Map (NGCHM) Construction Library |
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Initialization of the NGCHM library. |
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Next Generation Clustered Heat Map (NGCHM) Construction Library |
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Add an Axis to an NG-CHM Version 2 |
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Provide a simpler method for accessing repo methods |
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Helper function to cast variables as integers. |
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Helper function to cast list as integer |
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Add a list of objects to a NGCHM. |
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Add an axis type to a NGCHM. |
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Add custom CSS to a NGCHM. |
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Add a colormap to a NGCHM. |
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Add a covariate to an auxiliary dataset. |
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Add a covariate bar to a NGCHM. |
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Add an auxiliary dataset to a NGCHM. |
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Add an extra dialog to a NGCHM. |
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Add a Layer to a NGCHM. |
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Add a menu entry to a NGCHM. |
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Add MetaData to NG-CHM |
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Generate an overview image of the NGCHM when making it. |
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Add PCA coordinates to an NG-CHM. |
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Add custom property to a NGCHM. |
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Add reduced dimension coordinates to an NG-CHM. |
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Add a link to related information to the NGCHM. |
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Add a group of related links to the NGCHM. |
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Add a CHM-specific axis type function to a NGCHM. |
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Add TSNE coordinates to an NG-CHM. |
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Add tags to a NGCHM. |
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Add a file template to the NGCHM. |
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Add standard toolbox to an NG-CHM axis |
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Add Toolbox R2 to NG-CHM |
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Add Toolbox RC to NG-CHM |
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Add UMAP coordinates to an NG-CHM. |
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Add UWOT::UMAP coordinates to an NG-CHM. |
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Create a new Axis for adding to an NG-CHM. |
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Create a new AxisType for adding to an ngchmAxis. |
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Bind values to an existing JS function. |
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Browse the NGCHMs on the specified server in the viewer. |
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Set the column order of data shown in a NGCHM. |
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Set the color map of an NG-CHM object |
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Get the color map of an NG-CHM object. |
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Set the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate. |
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Get the colors of an ngchmColormap, ngchmLayer, ngchmBar, or ngchmCovariate. |
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Get a covariate attached to an NG-CHM dataset. |
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Get a covariate bar attached to an NG-CHM. |
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Create a new NG-CHM Collection |
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Create an ngchmServer object for a managed NG-CHM server |
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Create an ngchmServer object from a specification. |
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Get the user's current collection |
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Get the user's current server |
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Return default column order of an NGCHM |
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Return default row order of an NGCHM |
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Get the name of a NGCHM server. |
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Export a standalone NGCHM to a file. |
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Export a standalone HTML containing the NGCHM to a file. |
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Export a PDF of the NGCHM to a file. |
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Get Javascript function name for accessing a specific string field in each element of string vector. |
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Get the dataset from an NG-CHM object |
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Get per-user configuration for a specific deploy Server. |
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Get a predefined Javascript function for use in NGCHM menus |
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Get the file path to the specified overview file. |
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Get Property from NG-CHM |
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Get information about a type name. |
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Get the URL for an installed NGCHM. |
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Determine if the NG-CHM has the given property. |
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Add an NG-CHM to an NG-CHM collection. |
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Set the label/name of an NG-CHM object |
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Get the label/name of an NG-CHM object. |
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Set (or append) a specified Data Layer in an NG-CHM. |
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Get a specified Data Layer from an NG-CHM. |
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List the predefined Javascript functions available for use in NGCHM menus. |
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List NG-CHM Servers |
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List known axis types. |
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Load CHM from NG-CHM server |
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Load an NG-CHM from an NG-CHM server. |
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Compile a NGCHM. |
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Make NG-CHM Private on Server |
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Make NG-CHM Public on Server |
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Open the NG-CHM Manager |
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Get the name of a NGCHM. |
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Create a new NGCHM. |
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Create a new Color Map for use in constructing a NGCHM |
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Create a new Covariate for adding to an NGCHM auxilary dataset. |
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Create a new covariate Bar for a NGCHM |
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Create a new Data Layer for a NGCHM. |
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Create a new Dataset for a NGCHM. |
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Create a new Dialog for a NGCHM. |
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Create a new Javascript function for adding to a NGCHM menu. |
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Create a new Property for adding to a NGCHM. |
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Create a new object representing a NGCHM server. |
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Return original column order of an NGCHM |
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Return original row order of an NGCHM |
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Create NG-CHM Properties |
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Set the value of an NG-CHM property. |
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Get the value of an NG-CHM property. |
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Return random column order of an NGCHM |
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Return random row order of an NGCHM |
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Register a predefined Javascript function for use in NGCHM Axis menus. |
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Register a predefined Javascript function for use in NGCHM menus. |
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Define and register a Javascript function for obtaining a specific metadata value. |
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Register a predefined Javascript function for use in NGCHM Matrix menus. |
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Register a Javascript function for use in the NGCHM toolbox. |
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Register a type name. |
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Register a predefined Javascript function for converting values from one type to another. |
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Define and register a Javascript function for converting a lists of type values into single values. |
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Set the row order of data shown in a NGCHM. |
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Get a registered ngchmServer object for use in making and installing NGCHMs |
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Set the user's current server and/or collection |
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Set Access Credentials for NG-CHM Server |
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Specify per-user configuration for a specific deploy Server. |
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Get Javascript function name for performing a specific string operation on each element of a string vector. |
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Creates new treeCuts object |
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Remove an NG-CHM from Server |
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Get the base URL for a NGCHM installed on a NGCHM server. |
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Output Javascript code required to customize an NGCHM. |
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Generic method to get a dimensions matrix from obj. |
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Obtain the git hash of an existing file. |
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Initialize Logging |
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Class representing a Next Generation Clustered Heat Map (NGCHM) under construction. |
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Add a data file to a local shaidy repository |
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Add a matrix reference to a collection |
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Add an object reference to a collection |
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Class representing an axis of a Next Generation Clustered Heat Map (NG-CHM). |
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Class representing an axis function for Next Generation Clustered Heat Map (NGCHM). |
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Class representing a type attached to an axis in a Next Generation Clustered Heat Map (NGCHM). |
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Class representing a Covariate Bar on a Next Generation Clustered Heat Map (NGCHM). |
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Class representing custom CSS for a Next Generation Clustered Heat Map (NGCHM). |
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Recursively determine if collection uuid is contained in collection A collecton always contains itself. |
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Create a recursive description of a collection |
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Class representing a Color Map on a Next Generation Clustered Heat Map (NGCHM). |
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Class representing a Covariate attached to a Dataset |
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Create and register an NGCHM server protocol implementation. |
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Class representing a Dataset attached to a NGCHM |
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Class representing an addon dialog |
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Find a repository, if any, that contains the requested shaid |
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Compute shaid for a data file |
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Get the ngchm environment (for debugging only). |
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Get a HTTR handle for the server's view/WS URL |
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Get the axis labels of a shaidy dataset or dendrogram |
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Get the axis labels of a shaidy dataset or dendrogram |
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Get Protocol Parameter for NG-CHM Server |
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Get Server Protocol for NG-CHM |
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Initialize Shaidy Repository for NG-CHM |
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Class representing a custom Javascript function for a Next Generation Clustered Heat Map (NGCHM). |
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Class representing a Layer on a Next Generation Clustered Heat Map (NGCHM). |
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List defined server protocols |
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Load a data matrix from a local shaidy repository |
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Make an original format NGCHM. |
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Make a shaidy format NGCHM. |
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Class representing a matrix function for Next Generation Clustered Heat Map (NGCHM). |
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Class representing a Menu Item for a Next Generation Clustered Heat Map (NGCHM). |
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Class representing meta data attached to an NG-CHM |
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Create a new Classification Bar for a NGCHM |
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Create a new collection in a local shaidy repository |
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Class representing an overview of a Next Generation Clustered Heat Map (NGCHM). |
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Class representing a Generic Property for a Next Generation Clustered Heat Map (NGCHM). |
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Check Protocol Parameters for NG-CHM |
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Push a local shaidy repository onto the stack of source repositories |
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Push a shaidy server onto the stack of source repositories |
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Push Temporary Repository for NG-CHM |
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Register an ngchmServer. |
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Class representing a link related to a NGCHM |
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Class representing a group of related links to a NGCHM |
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Render a shaidy NGCHM |
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Return response content interpreted as JSON |
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Row center a shaidy dataset |
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Save a numeric matrix as a blob in a shaidy repository |
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Save a dendrogram as a blob in a shaidy repository |
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Save an NGCHM as a shaidy blob |
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Class representing a Next Generation Clustered Heat Map (NGCHM) server. |
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Class representing a deployment method for a Next Generation Clustered Heat Map (NGCHM) server. |
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Class representing a Template attached to a NGCHM |
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Get the tiles for a shaidy dataset |
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Class representing a type mapper function for Next Generation Clustered Heat Map (NGCHM). |
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Unregister NG-CHM Server |
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Class representing the properties of a data point in a Next Generation Clustered Heat Map (NGCHM). |
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Class representing ngchmVersion2 object |
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Optional Dendrogram |
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Open the NG-CHM on the specified server in the viewer. |
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Pretty Print NGCHM Type Information |
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Print a shaidy repository |
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Class representing the shaid of an object |
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Add data file(s) and properties to a local shaidy repository |
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Determine if one more blobs exist in a shaidy repository |
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Copy a blob from one repository to another |
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Create a prototype blob in a shaidy repository |
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Finalize a prototype blob |
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Find the first repository, if any, that contains the requested shaid |
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Get an object's component shaids |
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Get shaid for an object |
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Compute the shaid to assign a protoblob |
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Create and initialize Shaidy Repository |
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Load the provid -> shaid DB for a local shaidy repository |
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Load the provid -> labels DB for a local shaidy repository. |
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Load a shaidy repository |
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Create in memory shaid cache |
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Create a provid from a list of label values |
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Get the methods for the repository API called api |
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Helper class for setting row/col gap locations as tree cuts |
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Helper function to verify if variable is numeric. |