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Set the color map of an NG-CHM object

Source: R/functions.R
chmColorMap-set.Rd

Set the color map of an NG-CHM object

Usage

chmColorMap(x) <- value

Arguments

x

The NG-CHM object on which to set the color map.

value

The ngchmColormap value to set.

Value

The modified NG-CHM object.

See also

chmColorMap

Examples

# If the NGCHMDemoData package is installed, use it to demo usage
if (requireNamespace("NGCHMDemoData", quietly = TRUE)) {
  data(TCGA.GBM.EXPR, package = "NGCHMDemoData")
  dataLayer <- chmNewDataLayer("GBM layer", TCGA.GBM.EXPR[1:30, 1:30])
  chmColorMap(dataLayer) <- chmNewColorMap(c(2, 14))
}
# Small example not requiring NGCHMDemoData
matrix <- matrix(rnorm(100),
  nrow = 10, ncol = 10,
  dimnames = list(paste0("r", 1:10), paste0("c", 1:10))
)
dataLayer <- chmNewDataLayer("my layer", matrix)
chmColorMap(dataLayer) <- chmNewColorMap(c(2, 14))